PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g002590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 272aa    MW: 29717.8 Da    PI: 6.3725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g002590.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10156203455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Sopen05g002590.1 156 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALVLDEIINYIQSLQ 203
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.21E-10150207No hitNo description
SuperFamilySSF474591.31E-17150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18152223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-8156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PSSTAAAPQN VSDDVRNNDP  60
MVLDRRTNNY SGGGGGGSAR KRNEDDESAK GVSTSGNGLT ESASKRMKVT RSNENCEARG  120
DGEGNSVKSA EQPAKPAEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKVLQDIVP  180
GCNKVIGKAL VLDEIINYIQ SLQHQVEFLS MKLEAVNSKM PSIEGYPSKD FGQQPFDTNA  240
MAFSSQATRE YTRGTSPDWL HMQLGGGFER TT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139790.0BT013979.1 Lycopersicon esculentum clone 133024F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076833.10.0PREDICTED: transcription factor bHLH79
SwissprotQ0JXE72e-69BPE_ARATH; Transcription factor BPE
TrEMBLK4BWJ10.0K4BWJ1_SOLLC; Uncharacterized protein
STRINGSolyc05g006650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-90BIG PETAL P